How To Use Robin?

Follow the steps and you will learn the whole process.

Go To Our Site

Note

Remember to use http. Our site does not support https.

Fill The Form

  1. Click on SUBMIT A JOB button.
    _images/submit_a_job_btn.png
  2. Fill the form with a Job Title (e.g. Loop caller analysis) and Description (e.g. Benchmarking of loop caller tools).
    _images/form.png

Upload Loop Caller Result

  1. Type your Tool Name (e.g. cLoops).

  2. Type your tools’ Category (e.g. Clustering) name (if you have one).

  3. Type your Resolution (e.g. 5000 for 5KB, 250000 for 250KB) and upload the corresponding result file in BEDPE (Without Header) like format -

    chr1

    10

    20

    chr5

    50

    60

    a1

    30

    \(+\)

    \(-\)

    0

    1

    chr9

    30

    40

    chr9

    80

    90

    a2

    10

    \(+\)

    \(-\)

    2

    1

    See these example files: cLoops.bedpe, Chromosight.bedpe, HiCExplorer.bedpe, SIP.bedpe.

  4. Add additional resolution result file (if you have multiple resolution result file) by clicking Add Additional Resolution and repeat step 3.

  5. You must provide at least two tools results following the same procedures, step 1 - 4.

  6. Add additional tools files (if you have multiple tools result files) by clicking Add New Tool Data and repeat step 1 - 4.
    _images/upload_loop_result.png

Upload Protein Reference File

  1. Type your Protein Name (e.g. H3K27ac) and upload reference file.

    See this example file: h3k27ac.bedpe

  2. Add additional protein reference file (if you have multiple protein reference file) by clicking Add New Reference File and repeat step 1.
    _images/upload_protein_files.png

Enable/Disable HiGlass

  1. If you want to visualize in HiGlass (read full document for more understanding), tick HiGlass (default) or untick HiGlass if you do not want to use it.
    _images/enable_higlass.png
  2. If you tick HiGlass, provide Assembly Name (e.g. hg19, hg38) and upload the file (chromosome size file).

    See this example file: hg19.chrom.sizes

    _images/upload_ass_file.png

Submit Your Job

  1. Submit your job by clicking Upload And Submit.
    _images/upload_n_submit_btn.png

After Job Submission

  1. Wait for Robin job upload to be completed.

  2. Once it is completed, you will be redirected to the queue page.

  3. Make sure to click on the Bookmark button to be able to access the job results later.

  4. Explore your result within different tabs (Overlap, Regression, Protein e.g. H3K27ac, HiGlass, AI Assistant).
    _images/queue.png